As CPIB’s Bioinformatics Engineer, I am responsible for developing repositories for multi-scale systems biology models and Arabidopsis root image data produced at CPIB. I am researching standards and techniques for linking disparate modelling software systems and exploring ways to make CPIB models compatible with other Arabidopsis computer models.
See also:
CPIB Models Repository
BioModels Repository
Software Tools
Published Work
- Smith RE, Jiang, MK, Bacardit J, Stout M, Krasnogor N, Hirst JD (2010) Learning Classifier System with Mutual-Information-Based Fitness. Evolutionary Intelligence 3, 31–50
- Stout M, Bacardit J, Hirst JD, Smith RE, Krasnogor N (2009) Prediction of Topological Contacts in Proteins Using Learning Classier Systems. Soft Computing 19, 245–258
- Stout M, Bacardit J, Hirst JD, Krasnogor N (2008) Prediction of Recursive Convex Hull Class Assignments for Protein Residues. Bioinformatics 24, 916–923
Presented Work
- Multiscale modelling at CPIB with OpenAlea. At: UK Plant Systems Biology Meeting, Nottingham, UK 2010 Stout, M
Virtual Root
- DRIVE-db. At: Annual Plant Biology Symposium at the University of Massachusetts Amherst 2011 Michael Wilson, Andrew French, Darren Wells, Michael Stout, Charlie Hodgman, Tony Pridmore
Virtual Root
- DRIVE-db. At: 5th BBSRC Systems Biology Grant Holders' Workshop 2011 Michael Wilson, Andrew French, Darren Wells, Michael Stout, Charlie Hodgman, Tony Pridmore
Virtual Root
- The CPIB RootAtlas: A Tool For Viewing Integrative Root Systems Biology Data. At: 20th International Conference on Arabidopsis Research - Edinburgh, UK 2009 Wilson MH, Holman TJ, French AP, Stout M, Wells DM, Kenobi K, Bennett MJ, Holdsworth MJ, Pridmore TP, Hodgman TC
Virtual Root
