Tony Pridmore
background | publicationsTony Pridmore is Associate Professor and Reader in Computer Science at the University of Nottingham. He is Director of Data Capture and Management within the CPIB virtual root project. Tony’s research interests centre on computer vision and image analysis, particularly motion analysis and visual tracking.
Published Work
PAPERS
- Darren M. Wells*, Andrew P. French*, Asad Naeem *, Omer Ishaq*, Richard Traini , Hussein Hijazi, Malcolm J. Bennett, Tony P. Pridmore (2012) Recovering the dynamics of root growth and development using novel image acquisition and analysis methods. Philosophical Transactions of the Royal Society B: Biological Sciences 367, 1517–1524 [* these authors contributed equally]DOI: 10.1098/rstb.2011.0291 Full-text @ Publishers websiteRoot Systems ArchitectureVirtual Root
- Michael P. Pound, Andrew P. French, Darren M. Wells, Malcolm J. Bennett, Tony P. Pridmore (2012) CellSeT: novel software to extract and analyze structured networks of plant cells from confocal images. Plant Cell DOI: 10.1105/tpc.112.096289 Full-text @ Publishers websiteVirtual Root
- Mooney SJ, Pridmore TP, Helliwell J, Bennett MJ (2012) Developing X-ray Computed Tomography to non-invasively image 3-D root systems architecture in soil in Plant and Soil. Plant and Soil 352, 1–22 [Marschner Review]DOI: 10.1007/s11104-011-1039-9 Full-text @ Publishers websiteRoot Systems ArchitectureVirtual Root
- Leah R Band*, Darren M. Wells*, Antoine Larrieu*, Jianyong Sun*, Alistair M. Middleton*, Andrew P. French, Géraldine Brunoud, Ethel Mendocilla Sato, Michael H. Wilson, Benjamin Péret, Marina Oliva, Ranjan Swarup, Ilkka Sairanen, Geraint Parry, Karin Ljung, Tom Beeckman, Jonathan M. Garibaldi, Mark Estelle, Markus R. Owen, Kris Vissenberg, T. Charlie Hodgman, Tony P. Pridmore, John R King, Teva Vernoux, Malcolm J Bennett (2012) Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping point mechanism. PNAS 109, 4668–4673 [* these authors contributed equally]Virtual Root
- Andrew P French, Michael H Wilson, Kim Kenobi, Daniela Dietrich, Ute Voß, Susana Ubeda-Tomas, Tony P Pridmore, Darren M Wells (2012) Identifying biological landmarks using a novel cell measuring image analysis tool: Cell-o-Tape. Plant Methods 8:7 Virtual Root
- Mairhofer S, Zappala S, Tracy S, Sturrock C, Bennett M, Mooney S, Pridmore T (2011) RοοTrak: Automated Recovery of Three-Dimensional Plant Root Architecture in Soil from X-Ray Microcomputed Tomography Images Using Visual Tracking. Plant Physiology 158, 561–569 Root Systems ArchitectureVirtual Root
- Naeem A, French AP, Wells DM, Pridmore TP (2011) High-throughput feature counting and measurement of roots. Bioinformatics 27, 1337–1338 Virtual Root
- Sethuraman VS, French AP, Wells DM, Kenobi K, Pridmore TP (2011) Tissue-Level Segmentation and Tracking of Cells in Growing Plant Roots. Machine Vision and Applications DOI: 10.1007/s00138-011-0329-9 Full-text @ Publishers websiteVirtual Root
- Lucas M, Swarup R, Paponov IA, Swarup K, Casimiro I, Lake D, Péret B, Zappala S, Mairhofer S, Whitworth M, Wang J, Ljung K, Marchant A, Sandberg G, Holdsworth MJ, Palme K, Pridmore T, Mooney S, Bennett MJ (2010) Short-Root regulates primary, lateral, and adventitious root development in Arabidopsis. Plant Physiology 155, 384–98 Virtual Root
- French AP, Úbeda-Tomás S, Holman TJ, Bennett MJ, Pridmore TP (2009) High throughput quantification of root growth using a novel image analysis tool. Plant Physiology 150, 1784–1795 Virtual Root
- French AP, Mills S, Swarup R, Bennett MJ, Pridmore TP (2008) Colocalization of fluorescent markers in confocal microscope images of plant cells. Nature Protocols 3, 619–628 Virtual Root
BOOKS or CHAPTERS
- Andrew French, Darren Wells, Nicola Everitt, Tony Pridmore (2012) High-Throughput Quantification of Root Growth. Measuring Roots: An Updated Approach. Chapter 7. Mancuso, Stefano (Ed.) January 1, 2012 ISBN: ISBN 978-3-642-22066-1Virtual Root
CONFERENCE-PROCEEDINGS
- Sethuraman V, Taylor S, Pridmore TP, French AP, Wells DM (2009) Segmentation and Tracking of Confocal Images of Arabidopsis thaliana Root Cells using Automatically-Initialized Network Snakes. 3rd International Conference on Bioinformatics and Biomedical Engineering, Beijing, ChinaVirtual Root
- French AP, Bennett MJ, Howells C, Patel D, Pridmore TP (2008) Probabilistic Tracking Approach to Root measurement in Images. Biosignals 2008 - International Conference on Bio-inspired Systems and Signal Processing - Madeira, PortugalVirtual Root
Presented Work
PRESENTATIONS
- CellSeT: Cell-scale segmentation and tracking. At: 2nd International Plant Phenotyping Symposium, Juelich, Germany, September 5th-7th 2011 Andrew French, Michael Pound, Vijay Sethuraman, Darren Wells, Malcolm Bennett, Tony PridmoreVirtual Root
- Multi-scale Root Measurement via Image Analysis. At: Dept. of Agricultural Science, ETH, Zurich 2011 Pridmore TPVirtual Root
- Image Analysis for Plant Phenotyping: Assumptions and Prior Knowledge. At: BBSRC Rothamsted Research Centre 2011 Pridmore TP
- Quantitative Image Analysis at the Centre for Plant Integrative Biology. At: Oxford CISB, December 2010 2010 Pridmore TPVirtual Root
- Segmentation and tracking of networks of Arabidopsis thaliana cells through Confocal laser microscope images. At: Microscopy Image Analysis for Biomedical Applications: A One Day BMVA symposium at the British Computer Society, London, UK 2010 V Sethuraman, A French, D Wells, T PridmoreVirtual Root
- Probabilistic Tracking Approach to Root measurement in Images. At: Biosignals 2008 - International Conference on Bio-inspired Systems and Signal Processing - Madeira, Portugal 2008 French AP, Bennett MJ, Howells C, Patel D, Pridmore TPVirtual Root
POSTERS
- UK Plant Phenomics Network: promoting the development and uptake of plant phenomics. At: UK Plant Science Federation Inaugural Conference, John Innes Centre, Norwich 2012 Lydon SJ, Pridmore TP, Bennett MJ, Parry M, Scholes J, Rawlings C, Bastow R, Doonan J
- DRIVE-db. At: Annual Plant Biology Symposium at the University of Massachusetts Amherst 2011 2012 Michael Wilson, Andrew French, Darren Wells, Michael Stout, Charlie Hodgman, Tony PridmoreVirtual Root
- DRIVE-db. At: 5th BBSRC Systems Biology Grant Holders' Workshop 2011 Michael Wilson, Andrew French, Darren Wells, Michael Stout, Charlie Hodgman, Tony PridmoreVirtual Root
- Segmentation and Tracking of Networks of Arabidopsis thaliana Cells through Confocal Laser Microscope Images. At: 11th International Conference on Systems Biology, Edinburgh, Scotland, UK 2010 Andrew French, Vijay Sethuraman, Darren Wells, Tony PridmoreVirtual Root
- Segmentation and tracking of Arabidopsis thaliana root cells using automatically initialized network snakes. At: 4th BBSRC Systems Biology Grant Holders' Workshop. Edinburgh 2010 V Sethuraman, AP French, DM Wells, J Twycross, TP PridmoreVirtual Root
- The CPIB RootAtlas: A Tool For Viewing Integrative Root Systems Biology Data. At: 20th International Conference on Arabidopsis Research - Edinburgh, UK 2009 Wilson MH, Holman TJ, French AP, Stout M, Wells DM, Kenobi K, Bennett MJ, Holdsworth MJ, Pridmore TP, Hodgman TCVirtual Root
- High throughput quantification of root growth. At: 20th International Conference for Arabidopsis Research. Edinburgh 2009 Andrew French, Darren M. Wells, Susana Ubeda-Tomás, Tara J. Holman, Nicola M. Everitt, Malcolm J. Bennett, Tony PridmoreVirtual Root
- Robust probabilistic methods to trace and label a growing root. At: Workshop on growth phenotyping and imaging in plants - Montpellier 2007 French AP, Pridmore TP, Úbeda-Tomás S, Bennett MJVirtual Root
- Tracking multiple fluorescence-marked features in time-series confocal image. At: Biology in Motion Conference - Evian, CH 2007 French AP, Kurup S, Runions J, Bennett MJ, Pridmore TPVirtual Root