Twycross J*, Band LR*, Bennett MJ, King J, Krasnogor N (2010) Stochastic and Deterministic Multiscale models for Systems Biology: an Auxin-Transport Case Study. BMC Systems Biology 4, 34 [* contributed equally]
Virtual Root
The model associated with this paper is available in the Biomodels Repository @ the EBI
Leah R Band*, Darren M. Wells*, Antoine Larrieu*, Jianyong Sun*, Alistair M. Middleton*, Andrew P. French, Géraldine Brunoud, Ethel Mendocilla Sato, Michael H. Wilson, Benjamin Péret, Marina Oliva, Ranjan Swarup, Ilkka Sairanen, Geraint Parry, Karin Ljung, Tom Beeckman, Jonathan M. Garibaldi, Mark Estelle, Markus R. Owen, Kris Vissenberg, T. Charlie Hodgman, Tony P. Pridmore, John R King, Teva Vernoux, Malcolm J Bennett (2012) Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping point mechanism. PNAS 109, 4668–4673 [* these authors contributed equally]
Virtual Root
The model associated with this paper will be available in the Biomodels Repository @ the EBI and is also available in the following files:
DIIVENUS_reducedmodel.xml
DIIVENUS_fullmodel.xml
DIIVENUS_doseresponsedynamics_fulldimensionalmodel.m
DIIVENUS_doseresponsedynamics_reducedmodel.m
DIIVENUS_gravitropicdynamics.m
DIIVENUS_gravitropism_experimentaldata.mat
and for your convenience all the files in one archive zip | tar.gz
Muraro D, Byrne H, King J, Voß U, Kieber J, Bennett M. (2011) The influence of cytokinin-auxin cross-regulation on cell-fate determination in Arabidopsis thaliana root development. Journal of Theoretical Biology 283:152–167 [Faculty of 1000 - top 2% in biology and medicine papers]
Virtual Root
The model for associated with this paper is available in the Biomodels Repository @ the EBI
L.R. Band, S. Ubeda-Tomas, R.J. Dyson, A.M. Middleton, T.C. Hodgman, M.R. Owen, O.E. Jensen, M.J. Bennett, J.R. King (2012) Growth-induced hormone dilution can explain the dynamics of plant root cell elongation. PNAS
DOI: 10.1073/pnas.1113632109 Full-text @ Publishers website
Virtual Root
The model associated with this paper will be available in the Biomodels Repository @ the EBI and is also available in the following files:
GAdilution_modelsimulations.m
GAdilutionmodel_cellgrowthdata.mat