A Virtual Root
The Centre’s core project aimed to create a multiscale model of a plant root, based on the model higher plant Arabidopsis thaliana. The work was divided into four themes:
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Elongation of the primary root
Strand one of the CPIB virtual root project seeks to understand how cells elongate in the root as it grows. We investigate processes which take place on multiple scales, incorporating molecular level information from hormone signalling networks through to macroscale mechanical properties of the cell wall (which controls growth). This work gives us insight into the complex mechanisms involved within the highly controlled process of cell elongation.
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Root apical meristem development
Strand two of the CPIB virtual root project focuses on the dividing cells in the root apical meristem. Mapping the site of action of key hormones helps us understand how they are involved in regulating cell division in the root.
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The Lateral Root initiation and emergence
Part of the research programme in Strand three of the CPIB core project seeks to model the patterning and development of lateral root primordia. Also, lateral roots originate deep within the parental root from a small number of founder cells at the periphery of vascular tissues and must emerge through intervening layers of tissues. This process has been defined as “Lateral Root Emergence”. Part of Strand three of the CPIB core project is focusing on modelling how hormones regulate this process. This has lead to a project which has been funded by the BBSRC and Syngenta on Lateral Root Emergence
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Multiscale integration of the virtual root
Strand 4 of the CPIB virtual root project seeks to integrate models at different physical scales developed within the other three strands of the CPIB project. Integrative models will describe whole root responses to environmental cues. This requires the coupling of models of processes such as cell growth, hormone transport and genetic regulation. Experimental data is used extensively to parameterise and validate the models.
The Strand employs a wide range of tools from applied mathematics, computer science and statistics. Methods employed include mathematical multiscale asymptotic approaches, P-systems models, vertex-based multicellular simulation, statistical inference, Bayesian network models, hyper- and meta-heuristic optimisation and automated model synthesis. This activity is underpinned by an integrative model database and implementation of appropriate data standards.
- Ute Voß, Michael H. Wilson, Kim Kenobi, , , , Mikaël Lucas, Kamal Swarup, , Tara J. Holman, Darren M. Wells, Benjamin Péret, Tatsuaki Goh, , T. Charlie Hodgman, , , , , , & Malcolm J. Bennett 2015 The circadian clock rephases during lateral root organ initiation in Arabidopsis thaliana Nature Communications 6 7641
- Michael H. Wilson, Tara J. Holman, , Ester Cancho-Sanchez, Darren M. Wells, Ranjan Swarup, , , Susana Ubeda-Tomás, Michael Holdsworth, Malcolm J. Bennett, & T. Charlie Hodgman 2015 Multi-omics analysis identifies genes mediating the extension of cell walls in the Arabidopsis thaliana root elongation zone Frontiers in Cell and Developmental Biology 3, 10
- Rosemary J. Dyson, , Leah R. Band, Anwesha N. Fernandes, Andrew P. French, John A. Fozard, T. Charlie Hodgman, Kim Kenobi, Tony P. Pridmore, Michael Stout, Darren M. Wells, Michael H. Wilson, Malcolm J. Bennett & Oliver E. Jensen 2014 Mechanical modelling quantifies the functional importance of outer tissue layers during root elongation and bending New Phytologist 202 (4), 1212-1222
- Leah R. Band*, Darren M. Wells*, John A. Fozard, Teodor Ghetiu, Andrew P. French, Michael P. Pound, Michael H. Wilson, , , , Jaesung Oh, Simon P. Pearce, , , , , , , T. Charlie Hodgman, Tony P. Pridmore, Ranjan Swarup, John R. King & Malcolm J. Bennett 2014 Systems Analysis of Auxin Transport in the Arabidopsis Root Apex The Plant Cell 26 (3), 862-875
- Antoine P. Larrieu, Andrew P. French, Tony P. Pridmore, Malcolm J. Bennett & Darren M. Wells 2014 Time-Profiling Fluorescent Reporters in the Arabidopsis Root 1056:11-7
- Michael Wilson, Tatsuaki Goh, Ute Voß, Anthony Bishopp, Benjamin Péret & Malcolm Bennett 2013 SnapShot: Root Development Cell 155 (5), 1190-1190.e1
- Michael P. Pound, Andrew P. French, Jonathan Atkinson, Darren M. Wells, Malcolm J. Bennett & Tony P. Pridmore 2013 RootNav: Navigating Images of Complex Root Architectures Plant Physiology 162 (4), 1802-1814
- Darren M. Wells, , Malcolm J. Bennett, , & 2013 MicroFilament Analyzer, an image analysis tool for quantifying fibrillar orientation, reveals changes in microtubule organization during gravitropism The Plant Journal 74 (6), 1045–1058 , ,
- Mikaël Lucas, Kim Kenobi, , Ute Voß, Kamal Swarup, Ive De Smet, , Tara Lawrence, Benjamin Péret, , , , , , , , & Malcolm J. Bennett 2013 Lateral root morphogenesis is dependent on the mechanical properties of the overlaying tissues Proceedings of the National Academy of Sciences 110 (13), 5229-5234
- Stefan Mairhofer, Susan Zappala, Saoirse Tracy, Craig Sturrock, Malcolm John Bennett, Sacha Jon Mooney & Tony Paul Pridmore 2013 Recovering complete plant root system architectures from soil via X-ray μ-Computed Tomography Plant Methods 9 (1), 8
- Daniela Dietrich, , , , & 2013 Intrinsic acyl-CoA thioesterase activity of a peroxisomal ATP binding cassette transporter is required for transport and metabolism of fatty acids Proceedings of the National Academy of Sciences 110 (4), 1279-1284 , , ,
- Daniele Muraro#, Helen Byrne, John King & Malcolm Bennett 2013 The role of auxin and cytokinin signalling in specifying the root architecture of Arabidopsis thaliana Journal of Theoretical Biology 317, 71-86
- Daniele Muraro, Ute Voß, Michael Wilson, Malcolm Bennett, Helen Byrne, Ive De Smet, Charlie Hodgman & John King 2013 Inference of the Genetic Network Regulating Lateral Root Initiation in Arabidopsis thaliana IEEE/ACM Transactions on Computational Biology and Bioinformatics 10 (1), 50-60
- Tony P. Pridmore#, Andrew P. French & Michael P. Pound 2012 What lies beneath: underlying assumptions in bioimage analysis Trends in Plant Science 17 (12), 688-692
- Alistair M. Middleton, Markus R. Owen & 2012 Modeling Regulatory Networks to Understand Plant Development: Small Is Beautiful The Plant Cell Online 24 (10), 3876-3891
- Leah R. Band, John A. Fozard, , Oliver E. Jensen, Tony Pridmore, Malcolm J. Bennett & John R. King 2012 Multiscale Systems Analysis of Root Growth and Development: Modeling Beyond the Network and Cellular Scales The Plant Cell Online 24 (10), 3892-3906
- Benjamin Péret, , , Leah R. Band, Ute Voß, , , , , Mikaël Lucas, Darren M. Wells, , , John R. King, Oliver E. Jensen, , & Malcolm J. Bennett 2012 Auxin regulates aquaporin function to facilitate lateral root emergence Nature Cell Biology 14 (10), 991-998
- Kim Kenobi & Ian L Dryden 2012 Bayesian Matching of Unlabeled Point Sets Using Procrustes and Configuration Models Bayesian Analysis 7 (3), 547-566
- Jianyong Sun, Jonathan M. Garibaldi & Kim Kenobi 2012 Robust Bayesian Clustering for Replicated Gene Expression Data IEEE/ACM Transactions on Computational Biology and Bioinformatics 9 (5), 1504-1514
- R.J. Dyson, L.R. Band & O.E. Jensen 2012 A model of crosslink kinetics in the expanding plant cell wall: Yield stress and enzyme action Journal of Theoretical Biology 307, 125-136
- Andrew French, Darren Wells, Kim Kenobi & Tony Pridmore 2012 Tissue-level segmentation and tracking of cells in growing plant roots Machine Vision and Applications 23 (4), 639-658 ,
- Benjamin Péret*, Kamal Swarup*, , , , , , , , , , , Edward Venison, Caroline Howells, , , , , , , Malcolm J. Bennett, & Ranjan Swarup 2012 AUX/LAX Genes Encode a Family of Auxin Influx Transporters That Perform Distinct Functions during Arabidopsis Development Available online before publication in The Plant Cell Online
- Darren M. Wells*, Andrew P. French*, Asad Naeem*, , , , Malcolm J. Bennett & Tony P. Pridmore 2012 Recovering the dynamics of root growth and development using novel image acquisition and analysis methods Philosophical Transactions of the Royal Society B: Biological Sciences 367 (1595), 1517-1524
- Susana Úbeda-Tomás, & Malcolm J. Bennett 2012 Hormonal regulation of root growth: integrating local activities into global behaviour Trends in Plant Science 17 (6), 326-331
- Alistair M. Middleton, Susana Úbeda-Tomás, , Tara Holman, , , , Michael J. Holdsworth, Malcolm J. Bennett, John R. King & Markus R. Owen 2012 Mathematical modeling elucidates the role of transcriptional feedback in gibberellin signaling Proceedings of the National Academy of Sciences 109 (19), 7571-7576
- Leah R. Band*#, Susana Úbeda-Tomás*, Rosemary J. Dyson, Alistair M. Middleton, , Markus R. Owen, Oliver E. Jensen, Malcolm J. Bennett & John R. King 2012 Growth-induced hormone dilution can explain the dynamics of plant root cell elongation Proceedings of the National Academy of Sciences 109 (19), 7577-7582
- Michael P. Pound#, Andrew P. French, Darren M. Wells, Malcolm J. Bennett & Tony P. Pridmore 2012 CellSeT: Novel Software to Extract and Analyze Structured Networks of Plant Cells from Confocal Images The Plant Cell Online 24 (4), 1353-1361
- R. Huang, A.A. Becker# & I.A. Jones 2012 Modelling cell wall growth using a fibre-reinforced hyperelastic–viscoplastic constitutive law Journal of the Mechanics and Physics of Solids 60 (4), 750-783
- Leah R. Band*, Darren M. Wells*, Antoine Larrieu*, Jianyong Sun*, Alistair M. Middleton*, Andrew P. French, , , Michael H. Wilson, Benjamin Péret, , Ranjan Swarup, , , , , Jonathan M. Garibaldi, , Markus R. Owen, , , Tony P. Pridmore, John R. King, & Malcolm J. Bennett# 2012 Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanism Proceedings of the National Academy of Sciences 109 (12), 4668-4673
- Andrew P French#, Michael H Wilson, Kim Kenobi, Daniela Dietrich, Ute Voß, Susana Úbeda-Tomás, Tony P Pridmore & Darren M Wells 2012 Identifying biological landmarks using a novel cell measuring image analysis tool: Cell-o-Tape Plant Methods 8 (1), 7
- Anwesha N. Fernandes#, , , , Darren M. Wells, & Nicola M. Everitt 2012 Mechanical properties of epidermal cells of whole living roots of Arabidopsis thaliana : An atomic force microscopy study Physical Review E 85 (2), 021916
- J. Sun, J. M. Garibaldi, N. Krasnogor & 2012 An Intelligent Multi-Restart Memetic Algorithm for Box Constrained Global Optimisation Evolutionary Computation1-41
- Darren M. Wells, , Antoine Larrieu, , , , , , Malcolm J. Bennett & 2012 A novel sensor to map auxin response and distribution at high spatio-temporal resolution Nature 482 (7383), 103-106 ,
- S. Mooney#, T. Pridmore, & M. Bennett 2012 Developing X-ray Computed Tomography to non-invasively image 3-D root systems architecture in soil Plant and Soil 352 (1), 1-22
- Ive De Smet, , , , , , , , , , , , Martin R. Broadley, Benjamin Péret, , , Sacha Mooney, , , , , , & Malcolm Bennett 2012 Analyzing Lateral Root Development: How to Move Forward The Plant Cell Online 24 (1), 15-20
- Jianyong Sun, Jonathan M. Garibaldi & Charlie Hodgman 2012 Parameter Estimation Using Metaheuristics in Systems Biology: A Comprehensive Review IEEE/ACM Transactions on Computational Biology and Bioinformatics 9 (1), 185-202
- Anwesha N. Fernandes, , , , , , & 2011 Nanostructure of cellulose microfibrils in spruce wood Proceedings of the National Academy of Sciences 108 (47), E1195-E1203
- L. Band & J. King 2011 Multiscale modelling of auxin transport in the plant-root elongation zone Journal of Mathematical Biology1-43
- Daniele Muraro, Helen Byrne, John King, Ute Voß, & Malcolm Bennett 2011 The influence of cytokinin–auxin cross-regulation on cell-fate determination in Arabidopsis thaliana root development Journal of Theoretical Biology 283 (1), 152-167
- Jamie Twycross, , , , , Natalio Krasnogor, , Michael Holdsworth, , & 2011 A thermodynamic switch modulates abscisic acid receptor sensitivity The EMBO Journal 30 (20), 4171-4184 , , ,
- Valérie Morin, , , , , Antoine Larrieu, Darren Wells, , , , , , , , , , , , Malcolm Bennett, & 2011 The auxin signalling network translates dynamic input into robust patterning at the shoot apex Molecular Systems Biology 7 (1) , ,
- Daniele Muraro, Michael Wilson & Malcolm J Bennett 2011 Root Development: Cytokinin Transport Matters, Too! Current Biology 21 (11), R423-R425
- Jaesung Oh*, , , , , , , Malcolm J. Bennett, & 2011 Conserved Arabidopsis ECHIDNA protein mediates trans–Golgi-network trafficking and cell elongation Proceedings of the National Academy of Sciences 108 (19), 8048-8053 ,
- Asad Naeem, Andrew P. French#, Darren M. Wells & Tony P. Pridmore 2011 High-throughput feature counting and measurement of roots Bioinformatics 27 (9), 1337-1338
- Susana Úbeda-Tomás, Malcolm J. Bennett, & 2011 Brassinosteroid perception in the epidermis controls root meristem size Development 138 (5), 839-848 , , ,
- Mikaël Lucas#, & Malcolm J. Bennett 2011 Plant systems biology: network matters Plant, Cell & Environment 34 (4), 535–553
- Epidermal patterning in Arabidopsis: models make a difference Journal of Experimental Zoology Part B: Molecular and Developmental Evolution 316B (4), 241–253 , & 2011
- Ive De Smet, Ute Voß, , Michael Wilson, , , Ranjan Swarup, , Charlie Hodgman, , Malcolm Bennett, & 2011 Unraveling the Evolution of Auxin Signaling Plant Physiology 155 (1), 209-221
- Mikaël Lucas, Ranjan Swarup, , Kamal Swarup, , , Benjamin Peret, Susan Zappala, Stefan Mairhofer, , , , , , Michael J. Holdsworth, , Tony Pridmore, Sacha Mooney & Malcolm J. Bennett 2011 SHORT-ROOT Regulates Primary, Lateral, and Adventitious Root Development in Arabidopsis Plant Physiology 155 (1), 384-398
- Ming Qian#, Darren M. Wells, Arthur Jones & Adib Becker 2010 Finite element modelling of cell wall properties for onion epidermis using a fibre-reinforced hyperelastic model Journal of Structural Biology 172 (3), 300-304
- Darren M. Wells, Michael H. Wilson & Malcolm J. Bennett 2010 Feeling UPBEAT about Growth: Linking ROS Gradients and Cell Proliferation Developmental Cell 19 (5), 644-646
- Mikael Lucas*, , , Leah R. Band, , , , Benjamin Péret, John R. King, , , , Malcolm J. Bennett, & 2010 Auxin Carriers Localization Drives Auxin Accumulation in Plant Cells Infected by Frankia in Casuarina glauca Actinorhizal Nodules Plant Physiology 154 (3), 1372-1380 , ,
- Kamal Swarup, , , Malcolm J. Bennett & 2010 SHORT-ROOT and SCARECROW Regulate Leaf Growth in Arabidopsis by Stimulating S-Phase Progression of the Cell Cycle Plant Physiology 154 (3), 1183-1195 , , ,
- Benjamin Peret, , , Malcolm Bennett, , , , , , , , , , , , , & 2010 Shootward and rootward: peak terminology for plant polarity Trends in Plant Science 15 (11), 593-594 ,
- Michael Wilson, Tara Holman, , , , , , , , Malcolm J. Bennett & 2010 A Novel Aux/IAA28 Signaling Cascade Activates GATA23-Dependent Specification of Lateral Root Founder Cell Identity Current Biology 20 (19), 1697-1706 , , , , , , , , , , ,
- Kim Kenobi, Ian L. Dryden & 2010 Shape curves and geodesic modelling Biometrika 97 (3), 567-584
- A. Middleton#, J. King, M. Bennett & M. Owen 2010 Mathematical Modelling of the Aux/IAA Negative Feedback Loop Bulletin of Mathematical Biology 72 (6), 1383-1407
- Jianyong Sun & 2010 A Fast Algorithm for Robust Mixtures in the Presence of Measurement Errors IEEE Transactions on Neural Networks 21 (8), 1206 -1220
- R. J. Dyson# & O. E. Jensen 2010 A fibre-reinforced fluid model of anisotropic plant cell growth Journal of Fluid Mechanics 655, 472-503
- Jianyong Sun, & J.M. Garibaldi 2010 Robust mixture modeling using the Pearson type VII distribution In press in The 2010 International Joint Conference on Neural Networks (IJCNN)
- Jianyong Sun & J.M. Garibaldi 2010 A novel memetic algorithm for constrained optimization In press in 2010 IEEE Congress on Evolutionary Computation (CEC)
- Susana Úbeda-Tomás & Malcolm J. Bennett 2010 Plant Development: Size Matters, and It's All Down to Hormones Current Biology 20 (12), R511-R513
- Jamie Twycross*, Leah R Band*, Malcolm J Bennett, John R King & Natalio Krasnogor 2010 Stochastic and deterministic multiscale models for systems biology: an auxin-transport case study BMC Systems Biology 4 (1), 34
- C Lima, J Twycross, N Krasnogor & 2010 P System Model Optimisation by Means of Evolutionary Based Search Algorithms In press in Proceedings of the Genetic and Evolutionary Computation Conference ,
- Tara J Holman*, Michael H Wilson*, Kim Kenobi*, Ian L Dryden, T C Hodgman, & Michael J Holdsworth 2010 Statistical evaluation of transcriptomic data generated using the Affymetrix one-cycle, two-cycle and IVT-Express RNA labelling protocols with the Arabidopsis ATH1 microarray Plant Methods 6 (1), 9
- J. A. Fozard#, H. M. Byrne, O. E. Jensen & J. R. King 2010 Continuum approximations of individual-based models for epithelial monolayers Mathematical Medicine and Biology 27 (1), 39-74
- Malcolm Bennett & 2010 Getting to the root of plant biology: impact of the Arabidopsis genome sequence on root research The Plant Journal 61 (6), 992–1000 ,
- Ive De Smet#, , Ute Voß, , , , , , , , , , , , , , , , Malcolm J. Bennett, & 2010 Bimodular auxin response controls organogenesis in Arabidopsis Proceedings of the National Academy of Sciences 107 (6), 2705-2710
- Ranjan Swarup, Kamal Swarup, Benjamin Péret, , Malcolm Bennett & 2010 The AUX1 LAX family of auxin influx carriers is required for the establishment of embryonic root cell organization in Arabidopsis thaliana Annals of Botany 105 (2), 277-289 ,
- M. Bennett & 2009 Complex regulation of the TIR1/AFB family of auxin receptors Proceedings of the National Academy of Sciences 106 (52), 22540-22545 , , , , , , , ,
- Inference of gene regulatory networks using boolean-network inference methods Journal of Bioinformatics and Computational Biology 07 (06), 1013 & 2009
- Benjamin Péret, Antoine Larrieu & Malcolm J. Bennett 2009 Lateral root emergence: a difficult birth Journal of Experimental Botany 60 (13), 3637-3643
- Andrew French#, Susana Úbeda-Tomás, Tara J. Holman, Malcolm J. Bennett & Tony Pridmore 2009 High-Throughput Quantification of Root Growth Using a Novel Image-Analysis Tool Plant Physiology 150 (4), 1784-1795
- Susana Úbeda-Tomás*#, , , , , Ranjan Swarup, , & Malcolm J. Bennett# 2009 Gibberellin Signaling in the Endodermis Controls Arabidopsis Root Meristem Size Current Biology 19 (14), 1194-1199
- Benjamin Péret*#, , , , Ranjan Swarup, , & Malcolm J. Bennett 2009 Arabidopsis lateral root development: an emerging story Trends in Plant Science 14 (7), 399-408
- Jamie Twycross, , Malcolm Bennett, & Natalio Krasnogor 2009 Modular assembly of cell systems biology models using P systems International Journal of Foundations of Computer Science 20 (03), 427-442 ,
- TP Pridmore, AP French & D Wells 2009 Segmentation and Tracking of Confocal Images of Arabidopsis Thaliana Root Cells Using Automatically-Initialized Network Snakes , ,
- D M Wells, A P French, C Howells & N M Everitt 2009 A low-cost automated focusing system for time-lapse microscopy Measurement Science and Technology 20 (2), 027003 ,
- Malcolm J. Bennett & 2009 Divergent Evolution of Duplicate Genes Leads to Genetic Incompatibilities Within A. thaliana Science 323 (5914), 623-626 , , , , ,
- Ranjan Swarup, Malcolm J. Bennett, , & 2008 Auxin transport through non-hair cells sustains root-hair development Nature Cell Biology 11 (1), 78-84 , , ,
- Ranjan Swarup, , , Malcolm J. Bennett & 2008 The Binding of Auxin to the Arabidopsis Auxin Influx Transporter AUX1 Plant Physiology 148 (1), 529-535 , ,
- Malcolm Bennett & Nick Monk 2008 The flowering of systems approaches in plant and crop biology New Phytologist 179 (3), 567–568
- Kamal Swarup*, , Ranjan Swarup*, , Benjamin Péret, , , , Ive De Smet, , , , , , , , , , , , , , , , , , , , , & Malcolm J. Bennett 2008 The auxin influx carrier LAX3 promotes lateral root emergence Nature Cell Biology 10 (8), 946-954
- AP French#, MJ Bennett, C Howells, & TP Pridmore 2008 A PROBABILISTIC TRACKING APPROACH TO ROOT MEASUREMENT IN IMAGES - Particle Filter Tracking is used to Measure Roots, via a Probabilistic Graph In press in Proceedings of the First International Conference on Biomedical Electronics and Devices
- Susana Úbeda-Tomás, Ranjan Swarup, , Kamal Swarup, , , , & Malcolm J. Bennett 2008 Root growth in Arabidopsis requires gibberellin/DELLA signalling in the endodermis Nature Cell Biology 10 (5), 625-628
- Andrew P French#, , Ranjan Swarup, Malcolm J Bennett & Tony P Pridmore 2008 Colocalization of fluorescent markers in confocal microscope images of plant cells Nature Protocols 3 (4), 619-628
- Ranjan Swarup, Malcolm Bennett, & 2008 Auxin influx carriers stabilize phyllotactic patterning Genes & Development 22 (6), 810-823 , , ,
- Ranjan Swarup, , , , , , , , , , & Malcolm Bennett 2007 Cytokinins Act Directly on Lateral Root Founder Cells to Inhibit Root Initiation The Plant Cell Online 19 (12), 3889-3900 , , , , ,
- Benjamin Péret, Ranjan Swarup, , , , , , , , , Malcolm Bennett & 2007 Auxin Influx Activity Is Associated with Frankia Infection during Actinorhizal Nodule Formation in Casuarina glauca Plant Physiology 144 (4), 1852-1862
Papers
- RJ Dyson, & OE Jensen 2009 Modelling cell separation during plant organ abscission Proceedings of the 2nd Mathematics in the Plant Sciences Study Group , ,
- AM Middleton, RJ Dyson, LR Band, , DM Wells, TJ Holman, J Twycross & OE Jensen 2008 The Mechanics of Arabidopsis Seed Germination Proceedings of the Mathematics in the Plant Sciences Study Group
- Tara Holman, Darren Wells, Michael Wilson & Michael Holdsworth 2007 The mechanics of Arabidopsis seed germination Proceedings of the Mathematics in the Plant Sciences Study Group
Reports
- L. Band, A. Middleton, M. Wilson, M. Lucas, & M. Bennett 2012 Toward a Virtual Root: Interaction of Genomics and Modeling to Develop Predictive Biology Approaches . ,
- Andrew French, Darren Wells, Nicola Everitt & Tony Pridmore 2012 High-Throughput Quantification of Root Growth .
- Jamie Twycross 2010 Hormone Transport , &
- Malcolm Bennett, Darren Wells, Tara Holman & 2010 MALDI-MSI: a new tool for metabolite analysis in forensic science . , , , ,
- Alex Marshall, & Charlie Hodgman 2009 Graphical Analysis and Visualization Tools for Protein Interaction Networks . ,
- J Twycross, & 2008 A Multiscale Modeling Framework Based on P Systems Lecture Notes in Computer Science 5391, 63-77 ,
Books
- CellSeT Michael P Pound 2013
- Cell-o-Tape Andrew French 2013
- RootTrace Andrew French & Asad Naeem 2013
Software
- Pressure Probe Control and Analysis Software Darren M Wells 2013
- Imaging Robot Control Software Darren M Wells 2013
Equipment Software
- AT1G48850-5-R Antoine Larrieu, Edward Venison, Caroline Howells, Malcolm Bennett & Ranjan Swarup 2013
- AT1G77690-23-R Antoine Larrieu, Edward Venison, Caroline Howells, Malcolm Bennett & Ranjan Swarup 2013
- AT5G05730-24-R Antoine Larrieu, Edward Venison, Caroline Howells, Malcolm Bennett & Ranjan Swarup 2013
- AT5G17990-29-R Antoine Larrieu, Edward Venison, Caroline Howells, Malcolm Bennett & Ranjan Swarup 2013
- AT2G38120-33-R Antoine Larrieu, Edward Venison, Caroline Howells, Malcolm Bennett & Ranjan Swarup 2013
- AT4G33510-35-R Antoine Larrieu, Edward Venison, Caroline Howells, Malcolm Bennett & Ranjan Swarup 2013
- AT2G01420-37-R Antoine Larrieu, Edward Venison, Caroline Howells, Malcolm Bennett & Ranjan Swarup 2013
- AT1G73590-59-R Antoine Larrieu, Edward Venison, Caroline Howells, Malcolm Bennett & Ranjan Swarup 2013
- AT5G01240-86-R Antoine Larrieu, Edward Venison, Caroline Howells, Malcolm Bennett & Ranjan Swarup 2013
- AT1G70940-114-R Antoine Larrieu, Edward Venison, Caroline Howells, Malcolm Bennett & Ranjan Swarup 2013
- AT5G56660-170-R Antoine Larrieu, Edward Venison, Caroline Howells, Malcolm Bennett & Ranjan Swarup 2013
- AT5G54810-173-R Antoine Larrieu, Edward Venison, Caroline Howells, Malcolm Bennett & Ranjan Swarup 2013
- AT5G57090-15-R Antoine Larrieu, Edward Venison, Caroline Howells, Malcolm Bennett & Ranjan Swarup 2013
- AT2G04400-36-R Antoine Larrieu, Edward Venison, Caroline Howells, Malcolm Bennett & Ranjan Swarup 2013
- AT2G21050-51-R Antoine Larrieu, Edward Venison, Caroline Howells, Malcolm Bennett & Ranjan Swarup 2013
- AT1G15710-78-R Antoine Larrieu, Edward Venison, Caroline Howells, Malcolm Bennett & Ranjan Swarup 2013
- AT2G29690-73-R Antoine Larrieu, Edward Venison, Caroline Howells, Malcolm Bennett & Ranjan Swarup 2013
- AT4G39540-80-R Antoine Larrieu, Edward Venison, Caroline Howells, Malcolm Bennett & Ranjan Swarup 2013
- AT1G23080-97-R Antoine Larrieu, Edward Venison, Caroline Howells, Malcolm Bennett & Ranjan Swarup 2013
- AT4G39540-80-R Antoine Larrieu, Edward Venison, Caroline Howells, Malcolm Bennett & Ranjan Swarup 2013
- AT1G25220-175-R Antoine Larrieu, Edward Venison, Caroline Howells, Malcolm Bennett & Ranjan Swarup 2013
- AT5G33320-180-R Antoine Larrieu, Edward Venison, Caroline Howells, Malcolm Bennett & Ranjan Swarup 2013
- AT2G45300-181-R Antoine Larrieu, Edward Venison, Caroline Howells, Malcolm Bennett & Ranjan Swarup 2013
- AT1G48860-184-R Antoine Larrieu, Edward Venison, Caroline Howells, Malcolm Bennett & Ranjan Swarup 2013
Localisome
- Amplification Comparison Tara J. Holman & Michael H. Wilson 2013
- Five Section Wild-type Tara J. Holman & Michael H. Wilson 2013